For AutoDesk MapGuide 6.5 Java edition, our admins gave me an exe. There's an MSI inside. Just copy "ControlSetup.exe" from the temp install path while the installer is running on a PC (for my Win7/64 box it was c:\users\username\appdata\local\temp\pftE329~temp\control). You can check in Event Viewer\App Logs to see the path, if need be. Then run that as a standard MSI. We use SCCM 2007. No issues.
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