dotnetfx.exe /q:a /t:%TMP% /c:"msiexec.exe /i %TMP%\netfx.msi /qn"
The method above works only if you install dotnetfx.exe on the packaging machine first.. Otherwise fantastic!
A Service Pack 1 is available for .NET Framework version 1.0 here. The self-extracting archive contains an Windows Installer Patch file (MSP) as well as an ApplyPatch.exe and a QuietApplyPath.exe for easy deployment.
The MSP of Service Pack 2 for the .NET framework cannot be applied to the original MSI for a slipstreamed deployment (a requirement in a Group Policy based deployment scenario.) SP3 (in development) is planned to address this issue, but in the mean time SP2 may only be deployed to individual computers and not to the source MSI. For Group Policy environments, look to the startup and shutdown script options of GPO.
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