KACE Product Support

Recently became aware of Pro services Jkuery plugin that allows the customization of the Kace UI however we are having some trouble. The way this is supposed to work is you edit the marker files to point to your custom java script files however it appears as if when we do that the custom java script files are not being pulled into the html of the web interface. Has anyone used Jkuery successfully and do they have any tips or hints?